Variant report

Variant	rs7590052
Chromosome Location	chr2:148944507-148944508
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17218875	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs57204383	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59463463	0.88[EUR][1000 genomes]
rs60114880	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6719543	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6748352	0.88[EUR][1000 genomes]
rs73007127	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73007151	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73007156	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73007176	0.88[EUR][1000 genomes]
rs73007179	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73007190	0.88[EUR][1000 genomes]
rs73009203	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73009254	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73009259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73009261	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73009270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916286	chr2:148438001-148977722	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv916766	chr2:148743880-148955720	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1001339	chr2:148755022-149020866	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv535977	chr2:148755022-149020866	Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv869146	chr2:148787051-149060763	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv875276	chr2:148844369-148996824	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1004431	chr2:148859099-149054114	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv997674	chr2:148862630-148995570	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1007998	chr2:148866051-148995570	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1009608	chr2:148897348-149133718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv915953	chr2:148934787-148977722	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:148913000-148977600	Weak transcription	Aorta	Aorta
2	chr2:148919800-148945800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:148924400-148946400	Weak transcription	HSMMtube	muscle
4	chr2:148924600-148946800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:148925200-148959000	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:148928200-148945400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:148928400-148944600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr2:148928600-148993600	Weak transcription	HSMM	muscle
9	chr2:148928800-148945600	Weak transcription	Primary T cells from cord blood	blood
10	chr2:148929600-148944800	Weak transcription	Osteobl	bone
11	chr2:148929800-148960800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr2:148930600-148946000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:148930800-148948200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr2:148931000-148960600	Weak transcription	Spleen	Spleen
15	chr2:148931200-148948400	Weak transcription	Pancreas	Pancrea
16	chr2:148931200-148958600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:148931200-148993200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:148933800-148953400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr2:148935400-148946000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr2:148935600-148945000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr2:148935600-148945400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr2:148935600-148946000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr2:148935600-148946400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr2:148935800-148945400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr2:148936400-148945000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr2:148936800-148946000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:148937400-148946600	Weak transcription	Adipose Nuclei	Adipose
28	chr2:148937800-148945200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr2:148938400-148958600	Weak transcription	Fetal Intestine Small	intestine
30	chr2:148938400-148969200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:148938600-148944600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr2:148938600-148947400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr2:148939000-148945400	Weak transcription	Fetal Thymus	thymus
34	chr2:148939000-148946600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr2:148939000-148958600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr2:148940600-148944600	Weak transcription	Esophagus	oesophagus
37	chr2:148940600-148945400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr2:148940800-148944800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr2:148940800-148947200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr2:148941000-148958600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr2:148941200-148959400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr2:148942000-148945000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr2:148942200-148944600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr2:148942400-148944600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr2:148942400-148944800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:148942400-148944800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr2:148942600-148945000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr2:148942800-148945200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr2:148942800-148946400	Weak transcription	Fetal Stomach	stomach
50	chr2:148942800-148958600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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