Variant report

Variant	rs7590438
Chromosome Location	chr2:212584806-212584807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11685450	0.86[EUR][1000 genomes]
rs11895855	0.94[ASN][1000 genomes]
rs13002712	0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs13032114	0.86[EUR][1000 genomes]
rs13411267	0.95[ASN][1000 genomes]
rs6758038	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6758063	1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7422904	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7425190	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7425201	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7563762	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7591137	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7604206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212569400-212590800	Weak transcription	Fetal Kidney	kidney
2	chr2:212569600-212591800	Weak transcription	Fetal Heart	heart
3	chr2:212571200-212594800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:212575600-212592000	Weak transcription	Aorta	Aorta
5	chr2:212582800-212587400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:212583600-212589800	Weak transcription	Left Ventricle	heart
7	chr2:212583600-212595400	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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