Variant report
| Variant | rs7591267 |
|---|---|
| Chromosome Location | chr2:189089583-189089584 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | TCF7L2 | chr2:189089102-189089694 | HEK293 | kidney: | n/a | chr2:189089413-189089427 chr2:189089412-189089428 chr2:189089412-189089428 |
| 2 | POLR2A | chr2:189089006-189090226 | K562 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000213115 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10177792 | 0.94[AFR][1000 genomes] |
| rs10221704 | 1.00[AFR][1000 genomes] |
| rs10221866 | 1.00[AFR][1000 genomes] |
| rs1036650 | 1.00[AFR][1000 genomes] |
| rs11675697 | 0.94[AFR][1000 genomes] |
| rs13396118 | 0.94[AFR][1000 genomes] |
| rs1439890 | 0.94[AFR][1000 genomes] |
| rs1439899 | 0.94[AFR][1000 genomes] |
| rs1439908 | 0.94[AFR][1000 genomes] |
| rs1821996 | 0.82[AFR][1000 genomes] |
| rs4261683 | 0.94[AFR][1000 genomes] |
| rs6706840 | 0.94[AFR][1000 genomes] |
| rs6757116 | 0.94[AFR][1000 genomes] |
| rs7597147 | 0.94[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010394 | chr2:188994398-189284092 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv998395 | chr2:189018246-189284092 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv431879 | chr2:189079494-189118494 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
