Variant report

Variant	rs7593887
Chromosome Location	chr2:37602230-37602231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37595963..37598255-chr2:37600328..37602598,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1024812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1024814	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1024815	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10490448	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17020604	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020620	0.81[AFR][1000 genomes]
rs17020624	0.88[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs72866739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72866742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72866751	0.85[AFR][1000 genomes]
rs72879923	0.85[AFR][1000 genomes]
rs7570974	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7576265	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37577400-37607000	Weak transcription	Spleen	Spleen
2	chr2:37578200-37605400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:37578400-37604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:37579800-37603000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr2:37580200-37603400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr2:37583600-37607200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:37589200-37602800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:37589800-37602800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:37593400-37602800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:37593600-37602400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr2:37594600-37602600	Weak transcription	Osteobl	bone
12	chr2:37594600-37602800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:37598600-37602800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr2:37598800-37603600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:37599200-37602400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:37599200-37603800	Weak transcription	Fetal Brain Male	brain
17	chr2:37601800-37603200	Enhancers	Rectal Smooth Muscle	rectum
18	chr2:37602200-37603000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
19	chr2:37602200-37603400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:37602200-37604000	Enhancers	Colon Smooth Muscle	Colon
21	chr2:37602200-37604200	Enhancers	Fetal Lung	lung

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