Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10803742	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10929777	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10929780	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10929782	0.83[EUR][1000 genomes]
rs11677651	0.94[ASN][1000 genomes]
rs11692044	0.85[ASN][1000 genomes]
rs12471113	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12471545	0.94[ASN][1000 genomes]
rs13002221	0.94[ASN][1000 genomes]
rs1440037	0.86[ASN][1000 genomes]
rs1808849	0.85[ASN][1000 genomes]
rs2380410	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4600620	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4668745	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4669796	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669797	0.94[ASN][1000 genomes]
rs4669798	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7588279	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7588390	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7596479	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12155000-12164000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:12155400-12159800	Weak transcription	HSMMtube	muscle
3	chr2:12157800-12163000	ZNF genes & repeats	GM12878-XiMat	blood
4	chr2:12158800-12160800	Weak transcription	Fetal Lung	lung
5	chr2:12159200-12159400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:12159200-12159600	Enhancers	Primary B cells from cord blood	blood
7	chr2:12159200-12160000	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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