Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10167783	0.82[ASN][1000 genomes]
rs11890088	0.84[ASN][1000 genomes]
rs12475108	0.86[ASN][1000 genomes]
rs12612481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12990878	0.88[ASN][1000 genomes]
rs12994392	0.83[ASN][1000 genomes]
rs13034781	0.89[ASN][1000 genomes]
rs1358328	0.82[ASN][1000 genomes]
rs1405714	0.87[ASN][1000 genomes]
rs1527406	0.92[ASN][1000 genomes]
rs1527407	0.92[ASN][1000 genomes]
rs1544002	0.92[ASN][1000 genomes]
rs2222711	0.87[ASN][1000 genomes]
rs3770005	0.82[ASN][1000 genomes]
rs3770007	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3770008	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770009	0.87[ASN][1000 genomes]
rs3770010	0.83[ASN][1000 genomes]
rs3770011	0.87[ASN][1000 genomes]
rs3770012	0.87[ASN][1000 genomes]
rs3821006	0.83[ASN][1000 genomes]
rs4144275	0.89[ASN][1000 genomes]
rs4144276	0.82[ASN][1000 genomes]
rs4337505	0.92[ASN][1000 genomes]
rs4893838	0.87[ASN][1000 genomes]
rs6433684	0.92[ASN][1000 genomes]
rs7578325	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7605493	0.87[ASN][1000 genomes]
rs7605609	0.85[ASN][1000 genomes]
rs7605757	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs880897	0.87[ASN][1000 genomes]
rs880898	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583688	chr2:178427640-178540293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv431812	chr2:178525371-178584470	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178524800-178532800	Weak transcription	Fetal Kidney	kidney
2	chr2:178524800-178533400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:178528600-178534000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:178531200-178532200	Weak transcription	HSMM	muscle
5	chr2:178531400-178534800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:178531400-178535800	Weak transcription	GM12878-XiMat	blood
7	chr2:178531400-178540000	Weak transcription	K562	blood
8	chr2:178531600-178533800	Weak transcription	Dnd41	blood
9	chr2:178531800-178535000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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