The 2.0 version of rSNPBase

Variant report

Variant rs75976870
Chromosome Location chr20:16264726-16264727
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16242400-16275000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr20:16247600-16290800 Weak transcription Primary T helper naive cells fromperipheralblood blood
3 chr20:16248600-16291400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr20:16248800-16267000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr20:16248800-16272600 Weak transcription Primary T cells from cord blood blood
6 chr20:16249000-16272800 Weak transcription Right Ventricle heart
7 chr20:16249200-16277400 Weak transcription Brain Substantia Nigra brain
8 chr20:16250000-16266800 Weak transcription Brain Inferior Temporal Lobe brain
9 chr20:16251000-16265000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr20:16252000-16270800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr20:16252000-16289400 Weak transcription Rectal Smooth Muscle rectum
12 chr20:16252400-16283000 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr20:16252800-16264800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr20:16253000-16277800 Weak transcription Brain Angular Gyrus brain
15 chr20:16253600-16268200 Weak transcription Primary T cells fromperipheralblood blood
16 chr20:16254000-16265200 Weak transcription NHEK skin
17 chr20:16254000-16278800 Weak transcription Adipose Nuclei Adipose
18 chr20:16254000-16281400 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr20:16254000-16290800 Weak transcription Esophagus oesophagus
20 chr20:16254000-16298400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr20:16254200-16278600 Weak transcription Pancreas Pancrea
22 chr20:16254200-16284200 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr20:16255400-16283000 Weak transcription Fetal Lung lung
24 chr20:16257400-16264800 Weak transcription Primary B cells from cord blood blood
25 chr20:16261400-16264800 Weak transcription Spleen Spleen
26 chr20:16261400-16272800 Weak transcription Osteobl bone
27 chr20:16261600-16270800 Weak transcription HepG2 liver
28 chr20:16262000-16266600 Weak transcription Thymus Thymus
29 chr20:16262600-16285400 Weak transcription Ovary ovary
30 chr20:16262600-16346200 Weak transcription Gastric stomach
31 chr20:16263000-16265600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr20:16263200-16265000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr20:16263400-16265200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
34 chr20:16263600-16273200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr20:16263600-16277200 Weak transcription Stomach Smooth Muscle stomach
36 chr20:16263800-16264800 Enhancers Skeletal Muscle Male skeletal muscle
37 chr20:16263800-16265000 Enhancers Fetal Muscle Trunk muscle
38 chr20:16263800-16265600 Enhancers Fetal Muscle Leg muscle
39 chr20:16263800-16265800 Enhancers Psoas Muscle Psoas
40 chr20:16264000-16264800 Enhancers Skeletal Muscle Female skeletal muscle
41 chr20:16264200-16265600 Enhancers Primary B cells from peripheral blood blood
42 chr20:16264400-16264800 Enhancers Fetal Intestine Small intestine
43 chr20:16264400-16265200 Enhancers Fetal Adrenal Gland Adrenal Gland
44 chr20:16264400-16265200 Enhancers Small Intestine intestine
45 chr20:16264400-16265200 Enhancers HSMM muscle
46 chr20:16264400-16265600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
47 chr20:16264400-16265600 Enhancers Fetal Intestine Large intestine
48 chr20:16264400-16281600 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr20:16264600-16264800 Genic enhancers Lung lung
50 chr20:16264600-16265000 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015