Variant report

Variant	rs7598454
Chromosome Location	chr2:21900452-21900453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10495717	0.86[ASN][1000 genomes]
rs11893111	0.89[ASN][1000 genomes]
rs11893913	0.93[ASN][1000 genomes]
rs11894502	0.89[ASN][1000 genomes]
rs17042879	0.86[ASN][1000 genomes]
rs17042892	0.86[ASN][1000 genomes]
rs59801998	0.86[ASN][1000 genomes]
rs60451450	1.00[ASN][1000 genomes]
rs61350387	0.82[ASN][1000 genomes]
rs6547844	0.86[ASN][1000 genomes]
rs6713496	0.93[ASN][1000 genomes]
rs6722289	0.93[ASN][1000 genomes]
rs6722505	0.96[ASN][1000 genomes]
rs6722624	0.86[ASN][1000 genomes]
rs6722626	0.86[ASN][1000 genomes]
rs6726088	0.86[ASN][1000 genomes]
rs6731548	0.82[ASN][1000 genomes]
rs72898265	1.00[ASN][1000 genomes]
rs73919133	0.86[ASN][1000 genomes]
rs7587435	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1004702	chr2:21874266-21934331	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv581171	chr2:21897192-21952204	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21900200-21900800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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