Variant report

Variant	rs75994019
Chromosome Location	chr11:17928370-17928371
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv832079	chr11:17927967-18047743	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17838400-17971600	Weak transcription	Gastric	stomach
2	chr11:17863800-17939200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:17864400-17944800	Weak transcription	Ovary	ovary
4	chr11:17882800-17943800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:17885800-17939200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:17886000-17965200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:17895200-17939000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:17895800-17937200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:17895800-17943400	Weak transcription	Pancreas	Pancrea
10	chr11:17896000-17944600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:17896000-17968000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:17896400-17939200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:17896400-17968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:17896800-17939200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:17897400-17939400	Weak transcription	Adipose Nuclei	Adipose
16	chr11:17897600-17928400	Weak transcription	Primary B cells from cord blood	blood
17	chr11:17898800-17944200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:17899000-17930600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:17899200-17943400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:17906000-17970200	Weak transcription	Lung	lung
21	chr11:17910600-17947000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:17913400-17928400	Weak transcription	Fetal Brain Male	brain
23	chr11:17914400-17938800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr11:17914400-17939200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:17914600-17965400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:17914800-17928400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr11:17914800-17934600	Weak transcription	Aorta	Aorta
28	chr11:17914800-17939000	Weak transcription	Dnd41	blood
29	chr11:17914800-17939200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:17915400-17943000	Weak transcription	Spleen	Spleen
31	chr11:17915600-17939400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr11:17915800-17966000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:17917000-17943200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:17917000-17944600	Weak transcription	Brain Angular Gyrus	brain
35	chr11:17917000-17947600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:17917200-17938800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:17920600-17976000	Weak transcription	Esophagus	oesophagus
38	chr11:17923600-17939600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:17924200-17937200	Weak transcription	Psoas Muscle	Psoas
40	chr11:17925600-17932000	Weak transcription	HepG2	liver
41	chr11:17927000-17928400	Enhancers	H1 Cell Line	embryonic stem cell
42	chr11:17927000-17929200	Enhancers	GM12878-XiMat	blood
43	chr11:17927000-17939200	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:17927200-17929200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:17927400-17928400	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr11:17927400-17928600	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr11:17927400-17928600	Enhancers	Thymus	Thymus
48	chr11:17927600-17928400	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr11:17927600-17928400	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr11:17927600-17928600	Enhancers	Brain Inferior Temporal Lobe	brain

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