Variant report

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10165682	0.93[ASN][1000 genomes]
rs10171085	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10173029	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10929459	0.86[ASN][1000 genomes]
rs13388387	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13389927	0.93[ASN][1000 genomes]
rs13399034	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16865879	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56343514	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62107980	0.93[ASN][1000 genomes]
rs6746899	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6760438	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7558716	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469394	chr2:7197199-7230988	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv580914	chr2:7197199-7230988	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7194200-7234000	Weak transcription	Pancreas	Pancrea
2	chr2:7195000-7217000	Weak transcription	Fetal Muscle Leg	muscle
3	chr2:7203000-7214400	Weak transcription	Fetal Kidney	kidney
4	chr2:7203000-7217600	Weak transcription	Adipose Nuclei	Adipose
5	chr2:7204400-7218600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:7209400-7218600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr2:7210600-7214200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr2:7211400-7217000	Weak transcription	Right Ventricle	heart
9	chr2:7211800-7224000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:7212200-7215600	Weak transcription	Dnd41	blood
11	chr2:7213000-7215400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr2:7213200-7214800	Weak transcription	Primary T cells from cord blood	blood
13	chr2:7213400-7215200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:7213400-7218800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:7213800-7214200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:7213800-7214200	Enhancers	Brain Hippocampus Middle	brain
17	chr2:7213800-7214600	Enhancers	Brain Substantia Nigra	brain
18	chr2:7214000-7214200	Enhancers	Fetal Stomach	stomach
19	chr2:7214000-7214400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:7214000-7214600	Enhancers	Brain Angular Gyrus	brain

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