Variant report

Variant	rs7601356
Chromosome Location	chr2:211056657-211056658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12151736	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs12468576	0.86[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap]
rs12613036	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap]
rs2286963	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3738934	0.83[ASW][hapmap];0.81[CEU][hapmap];0.85[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap]
rs3764913	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7585265	1.00[ASW][hapmap];0.81[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211046800-211059800	Weak transcription	Pancreas	Pancrea
2	chr2:211051000-211086600	Weak transcription	Adipose Nuclei	Adipose
3	chr2:211052200-211085600	Weak transcription	Aorta	Aorta
4	chr2:211052400-211067400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:211053600-211059800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:211053800-211059800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:211053800-211059800	Weak transcription	Fetal Thymus	thymus
8	chr2:211053800-211059800	Weak transcription	Thymus	Thymus
9	chr2:211054600-211059800	Weak transcription	Fetal Intestine Small	intestine
10	chr2:211054600-211059800	Weak transcription	Stomach Mucosa	stomach
11	chr2:211054800-211059400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:211054800-211059800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:211055000-211059600	Weak transcription	Dnd41	blood
14	chr2:211055000-211059800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:211055200-211059800	Weak transcription	HepG2	liver
16	chr2:211055400-211060000	Weak transcription	Fetal Intestine Large	intestine
17	chr2:211056000-211058800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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