Variant report

Variant	rs760206
Chromosome Location	chr11:73686480-73686481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73684220..73687035-chr11:73766877..73770022,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11549045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132534	0.95[EUR][1000 genomes]
rs2632725	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2735572	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs45467092	0.98[EUR][1000 genomes]
rs45523540	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45529235	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs45566236	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45595943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs760207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	esv1827060	chr11:73670645-73694754	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv520299	chr11:73684294-73694754	Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73672800-73693200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:73675400-73692600	Weak transcription	Psoas Muscle	Psoas
3	chr11:73676000-73687400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:73676200-73687600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:73676400-73693200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:73676600-73691000	Weak transcription	Fetal Heart	heart
7	chr11:73680000-73686800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:73682600-73689200	Genic enhancers	Primary B cells from cord blood	blood
9	chr11:73683200-73689800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:73683200-73690800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:73683400-73689800	Genic enhancers	Thymus	Thymus
12	chr11:73683600-73688200	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:73683800-73687600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:73684000-73690800	Genic enhancers	Primary B cells from peripheral blood	blood
15	chr11:73684000-73691000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:73684000-73691000	Weak transcription	HUVEC	blood vessel
17	chr11:73684200-73686600	Genic enhancers	Primary hematopoietic stem cells	blood
18	chr11:73684200-73690000	Genic enhancers	Fetal Thymus	thymus
19	chr11:73684200-73691000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:73684400-73686600	Weak transcription	Left Ventricle	heart
21	chr11:73684400-73687400	Weak transcription	Right Ventricle	heart
22	chr11:73684400-73689600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:73684400-73690400	Strong transcription	Fetal Intestine Small	intestine
24	chr11:73684400-73690600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:73684400-73691200	Strong transcription	Fetal Stomach	stomach
26	chr11:73684600-73690800	Genic enhancers	Primary monocytes fromperipheralblood	blood
27	chr11:73684800-73692600	Weak transcription	Right Atrium	heart
28	chr11:73685000-73686600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
29	chr11:73685000-73686600	Genic enhancers	Dnd41	blood
30	chr11:73685000-73686800	Genic enhancers	Spleen	Spleen
31	chr11:73685000-73687200	Weak transcription	HSMM	muscle
32	chr11:73685000-73688200	Genic enhancers	Fetal Muscle Trunk	muscle
33	chr11:73685000-73688400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr11:73685000-73689800	Genic enhancers	GM12878-XiMat	blood
35	chr11:73685000-73690200	Strong transcription	Brain Hippocampus Middle	brain
36	chr11:73685000-73690800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:73685000-73691000	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr11:73685000-73691000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:73685000-73691200	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr11:73685000-73691200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:73685000-73691400	Genic enhancers	Fetal Muscle Leg	muscle
42	chr11:73685000-73691600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:73685000-73693000	Weak transcription	NHDF-Ad	bronchial
44	chr11:73685200-73686800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:73685200-73689200	Weak transcription	Fetal Kidney	kidney
46	chr11:73685200-73689400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:73685200-73689600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr11:73685200-73689800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:73685200-73690000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:73685200-73690200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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