Variant report

Variant	rs7602356
Chromosome Location	chr2:67793687-67793688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67787906..67790876-chr2:67792733..67794423,2	MCF-7	breast:
2	chr2:67788501..67790772-chr2:67790887..67793691,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224173	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10496151	0.86[AFR][1000 genomes]
rs12373662	0.86[AFR][1000 genomes]
rs12986714	0.82[EUR][1000 genomes]
rs12993096	0.83[EUR][1000 genomes]
rs17033724	0.86[AFR][1000 genomes]
rs60347136	0.86[AFR][1000 genomes]
rs60919594	1.00[AFR][1000 genomes]
rs72819816	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67789400-67795000	Weak transcription	Fetal Lung	lung
2	chr2:67789800-67795800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:67790400-67794800	Enhancers	HSMM	muscle
4	chr2:67790400-67798600	Weak transcription	Pancreas	Pancrea
5	chr2:67790800-67793800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:67790800-67794400	Enhancers	NHLF	lung
7	chr2:67790800-67795000	Enhancers	NHDF-Ad	bronchial
8	chr2:67790800-67795600	Enhancers	Osteobl	bone
9	chr2:67791600-67793800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:67791600-67794400	Enhancers	Stomach Mucosa	stomach
11	chr2:67791600-67794600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:67791600-67794600	Enhancers	HSMMtube	muscle
13	chr2:67792000-67795200	Weak transcription	Fetal Heart	heart
14	chr2:67792200-67794000	Weak transcription	Right Atrium	heart
15	chr2:67792200-67794200	Weak transcription	Left Ventricle	heart
16	chr2:67792600-67795400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:67792800-67795600	Enhancers	A549	lung
18	chr2:67793000-67793800	Enhancers	Fetal Stomach	stomach
19	chr2:67793400-67795400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr2:67793400-67795400	Enhancers	NH-A	brain
21	chr2:67793600-67793800	Enhancers	Psoas Muscle	Psoas
22	chr2:67793600-67793800	Flanking Active TSS	Hela-S3	cervix
23	chr2:67793600-67794400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:67793600-67794800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:67793600-67799400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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