Variant report

Variant	rs7602589
Chromosome Location	chr2:172177519-172177520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172176202..172179095-chr2:172290397..172292475,2	MCF-7	breast:
2	chr2:171878667..171880675-chr2:172176213..172177755,2	K562	blood:
3	chr2:172176143..172178918-chr2:172291065..172292847,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-METTL8-2	chr2:172175163-172177521	NONHSAT075452

Variant related genes	Relation type
ENSG00000123600	Chromatin interaction
ENSG00000115827	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11888556	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172163800-172181400	Weak transcription	Gastric	stomach
2	chr2:172165600-172179400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:172169200-172178800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:172169200-172182400	Weak transcription	Aorta	Aorta
5	chr2:172169200-172193400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:172169400-172179400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:172169600-172179400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:172169800-172181200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:172169800-172183200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr2:172170200-172192800	Weak transcription	Fetal Intestine Large	intestine
11	chr2:172170600-172178000	Weak transcription	Dnd41	blood
12	chr2:172170800-172177800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:172171200-172178000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:172171400-172190800	Weak transcription	Esophagus	oesophagus
15	chr2:172171800-172211600	Weak transcription	Fetal Intestine Small	intestine
16	chr2:172172000-172177600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr2:172172000-172177800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:172172400-172177800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr2:172172400-172178000	Enhancers	Fetal Brain Male	brain
20	chr2:172172600-172177600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr2:172172600-172177600	Weak transcription	Left Ventricle	heart
22	chr2:172172600-172179800	Weak transcription	Fetal Thymus	thymus
23	chr2:172172600-172190600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr2:172172800-172190600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr2:172172800-172222400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr2:172173000-172182200	Weak transcription	Liver	Liver
27	chr2:172173600-172186000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:172173800-172180200	Enhancers	Primary B cells from cord blood	blood
29	chr2:172174400-172177600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr2:172174400-172179400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr2:172174400-172180200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr2:172174600-172180000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:172175200-172178400	Enhancers	Fetal Brain Female	brain
34	chr2:172175200-172181800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr2:172175400-172178000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr2:172175400-172183000	Weak transcription	Fetal Lung	lung
37	chr2:172175400-172187600	Weak transcription	Fetal Muscle Leg	muscle
38	chr2:172175600-172177600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:172175600-172179600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr2:172175600-172180200	Strong transcription	HepG2	liver
41	chr2:172175600-172188000	Weak transcription	Adipose Nuclei	Adipose
42	chr2:172175800-172178000	Strong transcription	HMEC	breast
43	chr2:172175800-172183600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr2:172176000-172178800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr2:172176000-172183400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr2:172176000-172184400	Weak transcription	NHDF-Ad	bronchial
47	chr2:172176000-172187800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr2:172176200-172177600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr2:172176200-172177600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr2:172176200-172177800	Enhancers	HUES64 Cell Line	embryonic stem cell

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