Variant report

Variant	rs7602634
Chromosome Location	chr2:182504934-182504935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10930974	0.81[EUR][1000 genomes]
rs12991856	0.81[EUR][1000 genomes]
rs13029498	0.81[EUR][1000 genomes]
rs1473295	0.80[EUR][1000 genomes]
rs1866888	0.81[EUR][1000 genomes]
rs2165441	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3863938	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3910661	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3910662	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3910665	0.96[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs3916026	0.92[CEU][hapmap]
rs4018755	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4666792	0.81[EUR][1000 genomes]
rs6709122	0.89[EUR][1000 genomes]
rs7570291	0.81[EUR][1000 genomes]
rs7582095	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs935086	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1014910	chr2:182375267-182544114	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv536065	chr2:182375267-182544114	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv834477	chr2:182438121-182593527	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7602634	DUSP19	cis	parietal	SCAN
rs7602634	TTC30A	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182496400-182508800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:182498000-182505000	Weak transcription	Pancreas	Pancrea
3	chr2:182504400-182505200	Enhancers	Fetal Intestine Large	intestine
4	chr2:182504400-182505200	Enhancers	Fetal Intestine Small	intestine
5	chr2:182504400-182505200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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