Variant report

Variant	rs7602636
Chromosome Location	chr2:115472398-115472399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11903598	1.00[AMR][1000 genomes]
rs11904839	1.00[AMR][1000 genomes]
rs17043408	1.00[AFR][1000 genomes]
rs17043419	1.00[AMR][1000 genomes]
rs59792744	1.00[AMR][1000 genomes]
rs72955663	1.00[AMR][1000 genomes]
rs72955686	0.81[AFR][1000 genomes]
rs72955694	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv431502	chr2:115139566-115617936	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834338	chr2:115320185-115481229	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv431524	chr2:115425650-115530770	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115471200-115472600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:115471200-115472800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:115471400-115472400	Weak transcription	Brain Angular Gyrus	brain
4	chr2:115471400-115473400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:115471600-115472600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:115471600-115472800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:115471600-115473400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:115471800-115472600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:115471800-115472600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:115471800-115472600	Enhancers	Brain Germinal Matrix	brain
11	chr2:115471800-115472800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr2:115472000-115472400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr2:115472000-115472400	Enhancers	Brain Hippocampus Middle	brain
14	chr2:115472000-115472600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr2:115472000-115472600	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr2:115472000-115472800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr2:115472000-115472800	Enhancers	Brain Anterior Caudate	brain
18	chr2:115472200-115472800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:115472200-115474600	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links