Variant report

Variant	rs7602665
Chromosome Location	chr2:11560963-11560964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13031472	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13398666	0.92[ASN][1000 genomes]
rs13414905	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4436932	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62118915	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7589224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7600698	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7602665	ID2	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11546600-11584200	Weak transcription	Pancreas	Pancrea
2	chr2:11552600-11561000	Weak transcription	Psoas Muscle	Psoas
3	chr2:11559000-11561400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:11559800-11561000	Enhancers	Fetal Heart	heart
5	chr2:11560000-11561000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:11560000-11561200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:11560000-11561200	Enhancers	Adipose Nuclei	Adipose
8	chr2:11560200-11561000	Weak transcription	Left Ventricle	heart
9	chr2:11560400-11561200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:11560400-11561200	Enhancers	HSMMtube	muscle
11	chr2:11560400-11562800	Weak transcription	Right Ventricle	heart
12	chr2:11560400-11563000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:11560400-11584000	Weak transcription	Aorta	Aorta
14	chr2:11560600-11561200	Enhancers	NHDF-Ad	bronchial
15	chr2:11560600-11561800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr2:11560600-11563600	Enhancers	Ovary	ovary
17	chr2:11560600-11576800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:11560800-11562200	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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