Variant report

Variant	rs7602724
Chromosome Location	chr2:173383634-173383635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16860502	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860541	1.00[AMR][1000 genomes]
rs16860576	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860605	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860613	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860632	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860643	0.86[AFR][1000 genomes]
rs35661499	1.00[AMR][1000 genomes]
rs41383947	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41482144	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6721300	1.00[AMR][1000 genomes]
rs6730284	0.95[AFR][1000 genomes]
rs6741759	0.95[AFR][1000 genomes]
rs6745412	1.00[AMR][1000 genomes]
rs6748504	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6759915	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71417403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173377200-173386000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:173379800-173384200	Weak transcription	Primary B cells from cord blood	blood
4	chr2:173383400-173386800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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