Variant report

Variant	rs7602758
Chromosome Location	chr2:56561621-56561622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11885874	1.00[AMR][1000 genomes]
rs58390707	1.00[AMR][1000 genomes]
rs7558414	1.00[AMR][1000 genomes]
rs7568158	1.00[AMR][1000 genomes]
rs7594546	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv582032	chr2:56551074-56599354	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56560200-56563200	Enhancers	Adipose Nuclei	Adipose
2	chr2:56560400-56562000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:56560400-56562000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:56560400-56562200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:56560400-56562400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:56560600-56561800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:56560600-56561800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:56560600-56562000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr2:56560600-56562400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:56560600-56575400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:56560800-56562200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:56560800-56562800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr2:56560800-56563400	Weak transcription	Left Ventricle	heart
14	chr2:56561000-56562000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:56561000-56562600	Enhancers	HSMMtube	muscle
16	chr2:56561000-56562800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:56561000-56564000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr2:56561200-56562000	Enhancers	Brain Hippocampus Middle	brain
19	chr2:56561200-56562000	Enhancers	Fetal Heart	heart
20	chr2:56561200-56562000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr2:56561200-56562600	Enhancers	Colon Smooth Muscle	Colon
22	chr2:56561200-56564400	Weak transcription	HSMM	muscle
23	chr2:56561400-56561800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr2:56561600-56562400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:56561600-56562600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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