Variant report

Variant	rs7603077
Chromosome Location	chr2:151885556-151885557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10176466	0.83[EUR][1000 genomes]
rs10185069	0.84[EUR][1000 genomes]
rs10191747	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10193245	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10197086	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10200264	0.85[EUR][1000 genomes]
rs10211364	0.92[EUR][1000 genomes]
rs13390448	0.91[EUR][1000 genomes]
rs13396805	0.84[EUR][1000 genomes]
rs13412460	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs28701987	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62168640	0.83[EUR][1000 genomes]
rs62169393	0.85[EUR][1000 genomes]
rs7589623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7609040	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151879200-151888400	Weak transcription	Fetal Stomach	stomach
2	chr2:151883800-151886400	Enhancers	Fetal Lung	lung
3	chr2:151883800-151887200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:151883800-151888800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:151884000-151888800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:151884000-151889400	Weak transcription	Fetal Heart	heart
7	chr2:151884200-151885600	Weak transcription	Dnd41	blood
8	chr2:151884800-151887200	Enhancers	NHDF-Ad	bronchial
9	chr2:151885000-151886200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:151885200-151885600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:151885200-151885600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:151885200-151886000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:151885200-151886200	Enhancers	Osteobl	bone
14	chr2:151885200-151886800	Enhancers	NHLF	lung
15	chr2:151885400-151886000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:151885400-151886200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:151885400-151886800	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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