Variant report

Variant	rs7603981
Chromosome Location	chr2:233660732-233660733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6706932	1.00[AMR][1000 genomes]
rs6720568	1.00[AMR][1000 genomes]
rs7578409	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv834570	chr2:233639160-233805067	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv460134	chr2:233639909-233714686	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv584696	chr2:233639909-233714686	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233641400-233662400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:233642000-233667200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:233648600-233664000	Strong transcription	Fetal Muscle Trunk	muscle
4	chr2:233648800-233666800	Strong transcription	HSMM	muscle
5	chr2:233648800-233668000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:233649000-233680600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr2:233649200-233663000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:233649200-233665800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr2:233649400-233663000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr2:233649400-233663400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:233649400-233665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:233649400-233666000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:233649400-233667600	Strong transcription	Fetal Thymus	thymus
14	chr2:233649600-233663200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr2:233649600-233666800	Strong transcription	HepG2	liver
16	chr2:233649800-233666400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr2:233649800-233667000	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr2:233650000-233662200	Strong transcription	Fetal Brain Female	brain
19	chr2:233650000-233662800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:233650000-233663400	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr2:233650800-233664200	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr2:233651000-233662400	Strong transcription	Left Ventricle	heart
23	chr2:233651200-233662200	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr2:233651200-233662200	Strong transcription	Osteobl	bone
25	chr2:233651200-233663400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:233651200-233664600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:233651200-233668000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr2:233651400-233662800	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr2:233651400-233665600	Strong transcription	Primary hematopoietic stem cells	blood
30	chr2:233651400-233668000	Strong transcription	Liver	Liver
31	chr2:233651600-233663400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr2:233651800-233661400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr2:233651800-233661400	Strong transcription	Right Ventricle	heart
34	chr2:233651800-233661800	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr2:233651800-233662200	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr2:233651800-233662400	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr2:233651800-233662600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr2:233651800-233663200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr2:233651800-233663200	Strong transcription	Fetal Muscle Leg	muscle
40	chr2:233651800-233663200	Strong transcription	Placenta	Placenta
41	chr2:233651800-233663400	Strong transcription	GM12878-XiMat	blood
42	chr2:233651800-233664000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr2:233651800-233664200	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr2:233651800-233665600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr2:233651800-233666000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr2:233651800-233668000	Strong transcription	Dnd41	blood
47	chr2:233652000-233662400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr2:233652000-233664600	Strong transcription	Adipose Nuclei	Adipose
49	chr2:233652200-233666400	Strong transcription	Primary T cells from cord blood	blood
50	chr2:233652400-233661800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links