Variant report

Variant	rs7604521
Chromosome Location	chr2:113696018-113696019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12104658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4328638	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4396722	1.00[AMR][1000 genomes]
rs7576367	1.00[AMR][1000 genomes]
rs9784135	0.89[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113694000-113699200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:113694200-113696600	Weak transcription	NH-A	brain
3	chr2:113695000-113696200	Weak transcription	K562	blood
4	chr2:113695800-113697600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:113696000-113696200	Enhancers	Liver	Liver
6	chr2:113696000-113696800	Enhancers	Gastric	stomach
7	chr2:113696000-113697400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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