Variant report

Variant	rs7605183
Chromosome Location	chr2:39133067-39133068
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:39132712..39133257-chr2:39407445..39408044,2	MCF-7	breast:
2	chr2:39132185..39134413-chr2:39174424..39176269,2	MCF-7	breast:
3	chr2:39132787..39133640-chr2:39181092..39182273,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10495883	1.00[GIH][hapmap]
rs1376461	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs17023214	1.00[JPT][hapmap]
rs1901290	1.00[ASN][1000 genomes]
rs2373466	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs3099947	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3099953	1.00[ASN][1000 genomes]
rs3099997	1.00[ASN][1000 genomes]
rs3112138	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs3112155	0.83[AMR][1000 genomes]
rs3112158	1.00[JPT][hapmap]
rs3112160	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs3112164	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs3112174	1.00[ASN][1000 genomes]
rs3112176	0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs3112177	1.00[ASN][1000 genomes]
rs56322480	1.00[ASN][1000 genomes]
rs57884089	0.92[ASN][1000 genomes]
rs58412684	1.00[ASN][1000 genomes]
rs58645810	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59788371	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60406386	1.00[ASN][1000 genomes]
rs61393528	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6544182	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6712917	1.00[JPT][hapmap]
rs6722176	1.00[ASN][1000 genomes]
rs6722478	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs6748000	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7368897	1.00[JPT][hapmap]
rs73930372	1.00[AMR][1000 genomes]
rs73930373	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73930374	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73930378	1.00[ASN][1000 genomes]
rs7571935	1.00[ASN][1000 genomes]
rs921433	1.00[GIH][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7605183	SOS1	cis	lymphoblastoid	seeQTL
rs7605183	SOS1	cis	multi-tissue	Pritchard

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39126800-39134000	Weak transcription	Aorta	Aorta
3	chr2:39132000-39136200	Enhancers	HepG2	liver
4	chr2:39132400-39133400	Enhancers	GM12878-XiMat	blood
5	chr2:39132400-39136400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:39132600-39133800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:39132600-39135000	Enhancers	HMEC	breast
8	chr2:39132800-39134400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:39132800-39134400	Enhancers	NHEK	skin
10	chr2:39132800-39134800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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