Variant report

Variant	rs7605241
Chromosome Location	chr2:46628545-46628546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:46628301..46630616-chr2:46648050..46649778,2	K562	blood:
2	chr2:46628197..46631151-chr2:46648455..46651249,2	MCF-7	breast:
3	chr2:46620124..46622130-chr2:46627533..46629856,2	K562	blood:
4	chr2:46625225..46629384-chr2:46629582..46633284,5	K562	blood:

Variant related genes	Relation type
ENSG00000228100	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10192674	1.00[YRI][hapmap]
rs10865214	0.98[ASN][1000 genomes]
rs11686509	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11686705	0.83[EUR][1000 genomes]
rs11689649	0.82[AMR][1000 genomes]
rs11689694	0.82[AMR][1000 genomes]
rs11689989	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11691694	0.81[EUR][1000 genomes]
rs11693596	0.81[EUR][1000 genomes]
rs11693754	0.83[EUR][1000 genomes]
rs12991568	0.98[ASN][1000 genomes]
rs13424253	0.84[AMR][1000 genomes]
rs1900592	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900593	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4450662	0.92[ASN][1000 genomes]
rs55826825	0.81[EUR][1000 genomes]
rs55864213	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56058321	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56140012	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56768253	0.81[EUR][1000 genomes]
rs58481769	0.96[EUR][1000 genomes]
rs7591548	0.81[EUR][1000 genomes]
rs7606737	0.90[ASN][1000 genomes]
rs9677412	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012446	chr2:45921682-46737036	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv2757795	chr2:46532812-46874151	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv2759046	chr2:46532812-46874151	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	esv34650	chr2:46605659-46818992	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	esv2756919	chr2:46614235-46756431	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:46613200-46644200	Weak transcription	Aorta	Aorta
2	chr2:46620400-46631600	Weak transcription	K562	blood
3	chr2:46622800-46631200	Weak transcription	Placenta	Placenta

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