Variant report

Variant	rs7605688
Chromosome Location	chr2:55109908-55109909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9678463	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1796192	chr2:55081033-55110969	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55068600-55122400	Weak transcription	Brain Anterior Caudate	brain
2	chr2:55081400-55122400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:55087800-55126000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:55092400-55111000	Weak transcription	Pancreas	Pancrea
5	chr2:55095200-55148200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr2:55106600-55124000	Weak transcription	Spleen	Spleen
7	chr2:55107400-55122600	Weak transcription	Brain Substantia Nigra	brain
8	chr2:55107600-55110600	Weak transcription	Gastric	stomach
9	chr2:55108000-55110600	Weak transcription	Fetal Intestine Large	intestine
10	chr2:55109200-55110600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:55109200-55115800	Weak transcription	HSMMtube	muscle
12	chr2:55109200-55126800	Weak transcription	Brain Angular Gyrus	brain
13	chr2:55109200-55127600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr2:55109800-55110600	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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