Variant report

Variant	rs7606897
Chromosome Location	chr2:86207172-86207173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10173155	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10181916	0.83[AMR][1000 genomes]
rs10189191	0.83[AMR][1000 genomes]
rs1020095	0.81[AMR][1000 genomes]
rs10208184	0.83[ASN][1000 genomes]
rs1036553	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12714163	0.81[AMR][1000 genomes]
rs12714165	0.81[AMR][1000 genomes]
rs1561330	0.83[AMR][1000 genomes]
rs1866245	0.83[AMR][1000 genomes]
rs2083168	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2099616	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2099617	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2886885	0.83[ASN][1000 genomes]
rs311564	0.81[ASN][1000 genomes]
rs311576	0.82[ASN][1000 genomes]
rs311578	0.82[ASN][1000 genomes]
rs311579	0.82[ASN][1000 genomes]
rs311585	0.82[ASN][1000 genomes]
rs311588	0.82[ASN][1000 genomes]
rs3937593	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4346389	0.83[AMR][1000 genomes]
rs4480982	0.83[AMR][1000 genomes]
rs4832018	0.81[AMR][1000 genomes]
rs4832020	0.81[AMR][1000 genomes]
rs4832232	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4832233	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6547653	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6547654	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6547655	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs717144	0.85[ASN][1000 genomes]
rs7569152	0.81[AMR][1000 genomes]
rs7571529	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7586985	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7595420	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7599326	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7607138	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs879649	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs893442	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs934829	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs934830	0.83[AMR][1000 genomes]
rs934831	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7606897	IMMT	Cis_1M	lymphoblastoid	RTeQTL
rs7606897	MRPL35	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86204000-86208800	Weak transcription	Gastric	stomach
2	chr2:86204000-86221000	Weak transcription	Right Atrium	heart
3	chr2:86205400-86208000	Enhancers	Stomach Mucosa	stomach
4	chr2:86205600-86208600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:86205800-86207200	Enhancers	NHDF-Ad	bronchial
6	chr2:86205800-86208800	Weak transcription	Spleen	Spleen
7	chr2:86205800-86214200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:86206000-86207600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr2:86206000-86207600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:86206200-86207800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:86206600-86207800	Weak transcription	A549	lung
12	chr2:86207000-86207800	Weak transcription	Hela-S3	cervix
13	chr2:86207000-86211200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:86207000-86211400	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:86207000-86214400	Weak transcription	Adipose Nuclei	Adipose
16	chr2:86207000-86223400	Weak transcription	Liver	Liver

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