Variant report

Variant	rs76069026
Chromosome Location	chr4:77133175-77133176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
2	chr4:77132690..77134987-chr4:77135558..77138954,3	K562	blood:
3	chr4:77062870..77064723-chr4:77131850..77133606,2	K562	blood:
4	chr4:77066331..77070645-chr4:77133023..77136401,5	K562	blood:
5	chr4:77131893..77139465-chr4:77152630..77158664,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138750	Chromatin interaction
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3436996	chr4:77132828-77137126	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77113200-77134000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:77113600-77134200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:77117000-77134000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:77121400-77133600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:77121400-77134000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:77122400-77133600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:77128400-77133200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:77128800-77133400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr4:77128800-77133600	Enhancers	Small Intestine	intestine
10	chr4:77129800-77133400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:77130200-77133200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:77130200-77133400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:77130200-77133400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:77130200-77133800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr4:77130200-77133800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:77130800-77133600	Flanking Active TSS	Brain Cingulate Gyrus	brain
17	chr4:77130800-77133800	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr4:77130800-77134000	Enhancers	Primary B cells from peripheral blood	blood
19	chr4:77130800-77134000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr4:77130800-77134800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr4:77131000-77133200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:77131000-77133400	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr4:77131000-77133600	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr4:77131000-77134000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr4:77131000-77134600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:77131200-77133800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr4:77131200-77134200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr4:77131400-77133400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:77131400-77133800	Enhancers	Primary hematopoietic stem cells	blood
30	chr4:77131400-77134000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr4:77131400-77134000	Flanking Active TSS	Osteobl	bone
32	chr4:77131600-77133200	Flanking Active TSS	Fetal Brain Female	brain
33	chr4:77131600-77134200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:77131600-77134600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:77131600-77134600	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr4:77131600-77134600	Flanking Active TSS	Liver	Liver
37	chr4:77131800-77133400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:77131800-77134600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr4:77132200-77133200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:77132200-77133200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr4:77132200-77133200	Flanking Active TSS	NHLF	lung
42	chr4:77132200-77133400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
43	chr4:77132200-77133400	Enhancers	NHEK	skin
44	chr4:77132200-77133600	Flanking Active TSS	Fetal Brain Male	brain
45	chr4:77132200-77133600	Flanking Active TSS	Fetal Lung	lung
46	chr4:77132200-77133600	Flanking Active TSS	HSMMtube	muscle
47	chr4:77132200-77133800	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr4:77132200-77133800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr4:77132200-77134000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr4:77132200-77134000	Flanking Active TSS	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links