Variant report

Variant	rs7606974
Chromosome Location	chr2:151071001-151071002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151070416..151072908-chr2:151081382..151084515,3	MCF-7	breast:
2	chr2:151021749..151023909-chr2:151069571..151071445,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LYPD6-3	chr2:151070848-151071002	XLOC_001704
2	lnc-LYPD6-3	chr2:151070847-151071002	NONHSAT074918

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6725023	0.80[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6730644	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6741390	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7604467	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv469524	chr2:150927500-151076920	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv834412	chr2:151014270-151116638	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151063800-151071400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr2:151066000-151071200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:151066000-151071200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:151066400-151072800	Weak transcription	Colon Smooth Muscle	Colon
5	chr2:151067600-151071400	Weak transcription	NHLF	lung
6	chr2:151068800-151071200	Enhancers	Fetal Intestine Large	intestine
7	chr2:151069000-151073400	Enhancers	Stomach Mucosa	stomach
8	chr2:151069400-151071800	Weak transcription	Small Intestine	intestine
9	chr2:151069600-151071200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:151069600-151071200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr2:151069600-151071400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:151070000-151071200	Weak transcription	Fetal Kidney	kidney
13	chr2:151070000-151071200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:151070600-151071400	Weak transcription	Fetal Intestine Small	intestine
15	chr2:151070600-151072000	Enhancers	Fetal Lung	lung
16	chr2:151070800-151071400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr2:151070800-151071600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:151070800-151072000	Enhancers	Liver	Liver
19	chr2:151071000-151071200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:151071000-151071400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:151071000-151071400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr2:151071000-151071600	Enhancers	Duodenum Mucosa	Duodenum
23	chr2:151071000-151071800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr2:151071000-151071800	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr2:151071000-151071800	Flanking Active TSS	A549	lung
26	chr2:151071000-151071800	Enhancers	HepG2	liver
27	chr2:151071000-151072000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr2:151071000-151072000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr2:151071000-151072000	Enhancers	HUES6 Cell Line	embryonic stem cell

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