Variant report

Variant	rs7607017
Chromosome Location	chr2:7236438-7236439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7229093..7231064-chr2:7236083..7237840,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10182281	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10209265	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13390346	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13392260	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13432467	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1377379	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1453120	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1453121	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1901765	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2352399	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2882922	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4668518	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4668519	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4668521	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6431846	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6431847	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6431848	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6712003	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6725043	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6730204	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6745416	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9287679	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9287680	0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9287681	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9287682	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv437276	chr2:7229170-7246387	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv437277	chr2:7229170-7246387	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7224600-7237400	Weak transcription	Dnd41	blood
2	chr2:7226400-7237600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:7232000-7237600	Weak transcription	Ovary	ovary
4	chr2:7233800-7237800	Weak transcription	Gastric	stomach
5	chr2:7234400-7237400	Weak transcription	Fetal Heart	heart
6	chr2:7234600-7236800	Weak transcription	NH-A	brain
7	chr2:7234600-7237200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:7234600-7237600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:7234800-7236800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:7234800-7237600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:7234800-7237600	Weak transcription	Colon Smooth Muscle	Colon
12	chr2:7234800-7249800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:7235000-7237600	Weak transcription	Primary T cells from cord blood	blood
14	chr2:7235200-7237600	Weak transcription	Fetal Lung	lung
15	chr2:7235400-7237600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr2:7235400-7237600	Weak transcription	Fetal Intestine Large	intestine
17	chr2:7235400-7237600	Weak transcription	Pancreas	Pancrea
18	chr2:7235600-7237400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:7235600-7237600	Weak transcription	Fetal Kidney	kidney
20	chr2:7235800-7237800	Weak transcription	Spleen	Spleen
21	chr2:7236400-7236600	Enhancers	Lung	lung

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