Variant report

Variant	rs760789
Chromosome Location	chr6:11744790-11744791
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11743683..11746205-chr6:11753336..11755527,2	K562	blood:
2	chr6:11743986..11745912-chr6:11747510..11751154,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2235392	0.91[CEU][hapmap];0.86[AMR][1000 genomes]
rs2235414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2235418	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2235419	0.81[AMR][1000 genomes]
rs2294419	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2294421	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2294425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2294426	0.81[AMR][1000 genomes]
rs2294427	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2294428	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4713834	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4713849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932345	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348963	0.80[AMR][1000 genomes]
rs9366877	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9368855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs760789	C6orf105	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11719400-11762200	Weak transcription	Colonic Mucosa	Colon
2	chr6:11725200-11748600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11732400-11744800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:11732400-11750400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:11732800-11750400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:11734600-11745000	Weak transcription	HSMMtube	muscle
7	chr6:11735600-11754800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:11736200-11752400	Weak transcription	NHEK	skin
9	chr6:11736200-11754800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:11736600-11750600	Weak transcription	Stomach Mucosa	stomach
11	chr6:11737600-11744800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:11738600-11762000	Weak transcription	Gastric	stomach
13	chr6:11739000-11755000	Weak transcription	HMEC	breast
14	chr6:11739600-11751800	Weak transcription	HUVEC	blood vessel
15	chr6:11741600-11745400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:11742000-11755000	Weak transcription	HSMM	muscle
17	chr6:11743400-11744800	Weak transcription	Ovary	ovary
18	chr6:11743400-11745000	Weak transcription	Aorta	Aorta
19	chr6:11743600-11745400	Enhancers	Pancreas	Pancrea
20	chr6:11743800-11745000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:11743800-11745200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:11743800-11750200	Weak transcription	Small Intestine	intestine
23	chr6:11744000-11744800	Weak transcription	Lung	lung
24	chr6:11744200-11744800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:11744200-11745600	Enhancers	Fetal Muscle Leg	muscle
26	chr6:11744400-11744800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:11744400-11749000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:11744600-11744800	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr6:11744600-11745000	Enhancers	Placenta	Placenta
30	chr6:11744600-11745200	Enhancers	Fetal Thymus	thymus
31	chr6:11744600-11745200	Enhancers	Right Atrium	heart
32	chr6:11744600-11745400	Strong transcription	Duodenum Mucosa	Duodenum
33	chr6:11744600-11745600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:11744600-11745800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:11744600-11745800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:11744600-11745800	Enhancers	Adipose Nuclei	Adipose
37	chr6:11744600-11745800	Enhancers	Fetal Intestine Large	intestine
38	chr6:11744600-11745800	Enhancers	NHDF-Ad	bronchial

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