Variant report

Variant	rs76089839
Chromosome Location	chr4:166000422-166000423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026152	chr4:165622244-166027447	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv537336	chr4:165622244-166027447	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	esv1835468	chr4:165969625-166023258	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
8	esv1840053	chr4:165969625-166023258	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
9	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv596041	chr4:166000195-166004855	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
11	nsv511271	chr4:166000195-166010815	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv1000719	chr4:166000402-166010151	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165979000-166005600	Weak transcription	Pancreas	Pancrea
2	chr4:165980600-166005800	Weak transcription	Aorta	Aorta
3	chr4:165980600-166007000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:165985000-166007200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:165990600-166007000	Weak transcription	Right Ventricle	heart
6	chr4:165990800-166026600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:165991400-166000600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:165991600-166008400	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:165993600-166007000	Weak transcription	Fetal Lung	lung
10	chr4:165994200-166007800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:165994200-166008600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:165994400-166006600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:165994600-166006000	Weak transcription	Placenta	Placenta
14	chr4:165994600-166032800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:165994800-166005600	Weak transcription	Fetal Brain Female	brain
16	chr4:165994800-166006400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:165994800-166007400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:165995200-166000600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:165995400-166000600	Weak transcription	Gastric	stomach
20	chr4:165995400-166019600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr4:165995600-166005400	Weak transcription	Lung	lung
22	chr4:165995800-166000600	Weak transcription	Fetal Muscle Leg	muscle
23	chr4:165995800-166000800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:165995800-166005200	Weak transcription	Spleen	Spleen
25	chr4:165995800-166005600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr4:165995800-166007000	Weak transcription	K562	blood
27	chr4:165996000-166001400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:165996000-166002000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:165996000-166007000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr4:165996000-166019800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr4:165996000-166033000	Weak transcription	Thymus	Thymus
32	chr4:165996200-166000600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:165996200-166007000	Weak transcription	Fetal Kidney	kidney
34	chr4:165996200-166008200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:165996600-166006400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr4:165996600-166009400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr4:165996800-166001600	Strong transcription	Fetal Intestine Large	intestine
38	chr4:165996800-166032600	Weak transcription	Hela-S3	cervix
39	chr4:165997000-166001000	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr4:165997200-166001000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr4:165997200-166006000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr4:165997400-166002400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:165997400-166002600	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr4:165997400-166005200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr4:165997400-166018600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr4:165997600-166001000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr4:165997800-166007000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr4:165997800-166007000	Weak transcription	GM12878-XiMat	blood
49	chr4:165997800-166032400	Weak transcription	Fetal Brain Male	brain
50	chr4:165998000-166006600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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