Variant report

Variant	rs7609588
Chromosome Location	chr3:133588325-133588326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133583060..133584707-chr3:133586548..133589489,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73217237	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133573800-133591400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:133574200-133591600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:133579800-133591200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:133580800-133591200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:133581600-133592400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:133583800-133588800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:133584800-133591600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:133586000-133588800	Enhancers	Brain Anterior Caudate	brain
9	chr3:133586000-133588800	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:133586200-133588400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:133586400-133588400	Enhancers	Fetal Muscle Trunk	muscle
12	chr3:133586400-133588800	Enhancers	Brain Substantia Nigra	brain
13	chr3:133586800-133588600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:133586800-133588600	Enhancers	Brain Hippocampus Middle	brain
15	chr3:133586800-133588600	Enhancers	Fetal Heart	heart
16	chr3:133586800-133588800	Enhancers	Fetal Muscle Leg	muscle
17	chr3:133586800-133592000	Enhancers	Brain Angular Gyrus	brain
18	chr3:133587000-133588400	Enhancers	Left Ventricle	heart
19	chr3:133587000-133588400	Enhancers	Ovary	ovary
20	chr3:133587000-133588400	Enhancers	Right Ventricle	heart
21	chr3:133587000-133588600	Enhancers	Fetal Brain Female	brain
22	chr3:133587600-133588800	Enhancers	Right Atrium	heart
23	chr3:133587800-133588400	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr3:133587800-133591400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:133588000-133588400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:133588000-133588400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr3:133588000-133588800	Enhancers	Spleen	Spleen
28	chr3:133588200-133588400	Enhancers	Fetal Brain Male	brain
29	chr3:133588200-133590000	Weak transcription	Brain Germinal Matrix	brain
30	chr3:133588200-133591600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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