Variant report

Variant	rs7610603
Chromosome Location	chr3:61671861-61671862
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:56707655..56710951-chr3:61667052..61672815,9	MCF-7	breast:
2	chr17:57970990..57973457-chr3:61670508..61672926,2	MCF-7	breast:
3	chr3:61628542..61630516-chr3:61671004..61673939,2	MCF-7	breast:
4	chr3:61649143..61651185-chr3:61669950..61673093,3	MCF-7	breast:
5	chr3:61642841..61645183-chr3:61671562..61673610,2	MCF-7	breast:
6	chr3:61671806..61673622-chr3:61840984..61843092,2	MCF-7	breast:
7	chr17:56706381..56710374-chr3:61669788..61673824,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9812317	1.00[CEU][hapmap]
rs9843830	1.00[CEU][hapmap]
rs9870321	1.00[CEU][hapmap]
rs9878497	1.00[CEU][hapmap]
rs9879138	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008615	chr3:61455419-61679037	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1001611	chr3:61598148-61686809	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1000158	chr3:61598562-61682888	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv834712	chr3:61612540-61770232	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv876871	chr3:61648636-61725778	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1013884	chr3:61658915-61718573	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61662400-61672000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:61663200-61673600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:61663800-61673000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:61664000-61674200	Weak transcription	Fetal Stomach	stomach
5	chr3:61665600-61672000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:61665600-61673600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:61666000-61673800	Weak transcription	Small Intestine	intestine
8	chr3:61667800-61675800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:61668000-61673400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:61668200-61672400	Enhancers	Fetal Muscle Leg	muscle
11	chr3:61668400-61672200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr3:61668400-61680600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:61668600-61673800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:61668800-61672200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:61668800-61672200	Enhancers	Psoas Muscle	Psoas
16	chr3:61669000-61673800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:61669200-61673800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:61669400-61672400	Enhancers	Left Ventricle	heart
19	chr3:61669600-61672200	Enhancers	Right Atrium	heart
20	chr3:61669800-61672200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:61669800-61672200	Enhancers	Spleen	Spleen
22	chr3:61669800-61672400	Enhancers	Ovary	ovary
23	chr3:61669800-61672600	Enhancers	Colon Smooth Muscle	Colon
24	chr3:61669800-61673000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:61669800-61675200	Enhancers	Fetal Heart	heart
26	chr3:61670000-61675800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:61670000-61675800	Weak transcription	HSMM	muscle
28	chr3:61670200-61672000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:61670200-61678000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:61670400-61677000	Weak transcription	Aorta	Aorta
31	chr3:61670600-61672200	Enhancers	Esophagus	oesophagus
32	chr3:61670800-61673000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:61670800-61673200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr3:61670800-61673600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
35	chr3:61670800-61673800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:61671000-61672200	Enhancers	Liver	Liver
37	chr3:61671000-61672400	Enhancers	Colonic Mucosa	Colon
38	chr3:61671000-61673000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
39	chr3:61671000-61673600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
40	chr3:61671000-61674800	Enhancers	Right Ventricle	heart
41	chr3:61671200-61672000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr3:61671200-61672000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
43	chr3:61671200-61672200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:61671200-61672200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr3:61671200-61672600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:61671200-61673200	Enhancers	Duodenum Mucosa	Duodenum
47	chr3:61671400-61672200	Enhancers	Fetal Kidney	kidney
48	chr3:61671400-61673600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr3:61671400-61673600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:61671400-61674600	Enhancers	HepG2	liver

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