Variant report

Variant	rs7611150
Chromosome Location	chr3:118892014-118892015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2573195	1.00[YRI][hapmap]
rs4687979	1.00[AMR][1000 genomes]
rs6792631	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829692	chr3:118727772-118901711	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118882800-118892200	Weak transcription	Fetal Heart	heart
2	chr3:118884000-118914200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:118890200-118894400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:118890200-118900600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:118890400-118892400	Enhancers	A549	lung
6	chr3:118890400-118894800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:118891800-118892200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr3:118891800-118892800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:118892000-118892200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:118892000-118892200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr3:118892000-118892200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr3:118892000-118892200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:118892000-118892200	Bivalent Enhancer	Fetal Thymus	thymus
14	chr3:118892000-118892400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:118892000-118892400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
16	chr3:118892000-118892400	Enhancers	Stomach Mucosa	stomach
17	chr3:118892000-118892600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr3:118892000-118893000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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