Variant report

Variant	rs7611233
Chromosome Location	chr3:134874869-134874870
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1159402	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12492126	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1404581	1.00[JPT][hapmap]
rs1554675	1.00[JPT][hapmap]
rs2177693	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2400443	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3772645	1.00[JPT][hapmap]
rs6439559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6764768	0.81[EUR][1000 genomes]
rs6772933	1.00[JPT][hapmap]
rs6801065	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs6805145	1.00[JPT][hapmap]
rs6810117	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs73218243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7373775	1.00[JPT][hapmap]
rs7647433	1.00[JPT][hapmap]
rs868909	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs872514	1.00[JPT][hapmap]
rs9836334	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134823000-134880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:134861000-134878200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:134861600-134880600	Weak transcription	Fetal Brain Female	brain
4	chr3:134867800-134884800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:134868000-134876800	Weak transcription	Brain Substantia Nigra	brain
6	chr3:134868000-134878400	Weak transcription	Brain Anterior Caudate	brain
7	chr3:134868000-134878400	Weak transcription	Fetal Brain Male	brain
8	chr3:134868600-134878600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:134868600-134883800	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:134869000-134878600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:134872600-134876600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:134872800-134885000	Weak transcription	Brain Germinal Matrix	brain
13	chr3:134874400-134878600	Enhancers	Liver	Liver
14	chr3:134874800-134901800	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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