Variant report

Variant	rs7612033
Chromosome Location	chr3:28426978-28426979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1058569	1.00[JPT][hapmap]
rs11129315	1.00[JPT][hapmap]
rs12054477	0.82[CHB][hapmap]
rs13061948	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs13099814	0.82[CHB][hapmap]
rs1379656	0.86[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1379657	0.87[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1609729	1.00[JPT][hapmap]
rs2125203	0.92[ASN][1000 genomes]
rs4339073	0.81[EUR][1000 genomes]
rs4680915	0.86[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.81[AFR][1000 genomes]
rs4680916	0.80[EUR][1000 genomes]
rs6551247	0.81[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs6551253	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs6777813	0.91[CEU][hapmap];0.91[MEX][hapmap]
rs6789421	1.00[ASW][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.81[MKK][hapmap]
rs6791550	1.00[JPT][hapmap]
rs7611318	1.00[JPT][hapmap]
rs7613767	1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs974933	0.86[CHB][hapmap]
rs9831010	0.88[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap]
rs9854180	0.86[CEU][hapmap];0.93[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv979765	chr3:28401267-28427998	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7612033	OSBPL10	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28420800-28433000	Weak transcription	Ovary	ovary
2	chr3:28425200-28431400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:28426000-28433000	Weak transcription	Right Ventricle	heart

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