Variant report

Variant	rs7612090
Chromosome Location	chr3:85729502-85729503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1037231	0.81[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs12639137	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13060858	0.82[CHB][hapmap]
rs1375215	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs1448599	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1448600	0.84[CEU][hapmap];0.83[CHB][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17334678	0.84[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2325026	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4423783	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4452341	0.87[EUR][1000 genomes]
rs4553985	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6549051	0.83[CHB][hapmap];0.81[CHD][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs6785531	0.87[EUR][1000 genomes]
rs6800957	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs6807339	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73147228	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7623480	0.81[ASW][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs7648093	0.81[CEU][hapmap];0.89[CHB][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs921230	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs9827598	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9846229	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs9883807	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs9883919	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877104	chr3:85646426-85737646	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85720200-85730400	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:85725200-85730400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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