Variant report

Variant	rs7613815
Chromosome Location	chr3:151229151-151229152
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12485986	0.85[EUR][1000 genomes]
rs4234326	0.83[EUR][1000 genomes]
rs4234327	0.83[EUR][1000 genomes]
rs4234328	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4234329	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4256104	0.83[EUR][1000 genomes]
rs4257516	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4266168	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4273348	0.83[EUR][1000 genomes]
rs4339091	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4402912	0.83[EUR][1000 genomes]
rs4532110	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4550807	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4583622	0.83[EUR][1000 genomes]
rs4605516	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4679835	0.80[EUR][1000 genomes]
rs4679847	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4679848	0.83[EUR][1000 genomes]
rs4680484	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4680487	0.83[EUR][1000 genomes]
rs6440757	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6786901	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7615314	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7617483	0.83[EUR][1000 genomes]
rs7622835	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7623843	0.83[EUR][1000 genomes]
rs7629176	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7637276	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9289848	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9811627	0.85[EUR][1000 genomes]
rs9816549	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9821181	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9825219	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9829893	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9841068	0.83[EUR][1000 genomes]
rs9880648	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9882955	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv877649	chr3:151147968-151236562	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151219000-151252400	Weak transcription	Ovary	ovary

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