Variant report

Variant	rs7614358
Chromosome Location	chr3:143322120-143322121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34029020	0.81[AFR][1000 genomes]
rs7626666	1.00[AFR][1000 genomes]
rs9755486	0.81[AFR][1000 genomes]
rs9755504	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143297600-143339000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr3:143300400-143336800	Weak transcription	Primary T cells from cord blood	blood
3	chr3:143317400-143323200	Weak transcription	Ovary	ovary
4	chr3:143318000-143324000	Weak transcription	Brain Anterior Caudate	brain
5	chr3:143318400-143323800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:143318600-143332600	Weak transcription	Brain Substantia Nigra	brain
7	chr3:143319600-143322200	Enhancers	HMEC	breast
8	chr3:143320800-143323200	Weak transcription	Primary B cells from cord blood	blood
9	chr3:143320800-143323200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:143321000-143327800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:143321200-143322400	Weak transcription	Small Intestine	intestine
12	chr3:143321200-143323000	Weak transcription	Fetal Lung	lung
13	chr3:143321200-143324400	Weak transcription	Gastric	stomach
14	chr3:143321400-143323200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:143321400-143323800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:143321800-143322200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr3:143321800-143322400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:143322000-143323200	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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