Variant report

Variant	rs7614513
Chromosome Location	chr3:160256174-160256175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160254211..160257700-chr3:160273142..160275155,4	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11929258	1.00[CHB][hapmap]
rs12106837	1.00[ASN][1000 genomes]
rs12107576	1.00[ASN][1000 genomes]
rs16831313	0.87[ASN][1000 genomes]
rs2272490	1.00[ASN][1000 genomes]
rs2278848	1.00[CHB][hapmap]
rs2305402	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3773370	1.00[CHB][hapmap]
rs6773833	1.00[ASN][1000 genomes]
rs6773856	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	esv1800136	chr3:159950498-160278160	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	esv1801767	chr3:159950498-160279411	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv1008519	chr3:160038710-160292589	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
7	nsv877701	chr3:160228001-160283815	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160217400-160259600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:160219800-160263600	Weak transcription	Right Ventricle	heart
3	chr3:160220600-160261200	Weak transcription	Pancreas	Pancrea
4	chr3:160225600-160259800	Weak transcription	Stomach Mucosa	stomach
5	chr3:160234200-160258200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:160234600-160261000	Weak transcription	Spleen	Spleen
7	chr3:160234600-160281000	Weak transcription	Aorta	Aorta
8	chr3:160235000-160266600	Weak transcription	Esophagus	oesophagus
9	chr3:160239600-160265200	Weak transcription	Brain Substantia Nigra	brain
10	chr3:160240200-160280400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:160241000-160256400	Weak transcription	Psoas Muscle	Psoas
12	chr3:160244200-160272200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:160244400-160263400	Weak transcription	Small Intestine	intestine
14	chr3:160244800-160256800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr3:160244800-160259600	Weak transcription	Brain Angular Gyrus	brain
16	chr3:160245000-160258400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:160245000-160259800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:160245200-160262200	Weak transcription	Fetal Kidney	kidney
19	chr3:160246600-160279200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:160246800-160266400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr3:160247000-160258400	Weak transcription	HSMMtube	muscle
22	chr3:160247000-160259800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:160247000-160261000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:160247000-160270400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:160247000-160281000	Weak transcription	Thymus	Thymus
26	chr3:160248400-160261200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:160248400-160261200	Weak transcription	Gastric	stomach
28	chr3:160248400-160261200	Weak transcription	Lung	lung
29	chr3:160248400-160261200	Weak transcription	Ovary	ovary
30	chr3:160248400-160261600	Weak transcription	Fetal Stomach	stomach
31	chr3:160248800-160263000	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:160248800-160268600	Weak transcription	NHLF	lung
33	chr3:160249000-160256600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr3:160249200-160261200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr3:160249200-160279000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr3:160249800-160261600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:160250400-160258400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:160250400-160271600	Weak transcription	HepG2	liver
39	chr3:160250600-160259400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:160250800-160256400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr3:160251000-160258400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr3:160251000-160266800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr3:160251200-160261000	Weak transcription	Left Ventricle	heart
44	chr3:160251200-160282000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:160251600-160263400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr3:160251800-160263000	Weak transcription	GM12878-XiMat	blood
47	chr3:160252200-160256600	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:160252200-160260000	Weak transcription	A549	lung
49	chr3:160252400-160267200	Weak transcription	Primary B cells from cord blood	blood
50	chr3:160252800-160258600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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