Variant report

Variant	rs7615158
Chromosome Location	chr3:140225492-140225493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs168387	0.82[TSI][hapmap]
rs16850442	1.00[JPT][hapmap];0.93[TSI][hapmap]
rs180971	0.82[TSI][hapmap]
rs349506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs349535	0.82[TSI][hapmap]
rs349538	0.82[TSI][hapmap]
rs349552	1.00[JPT][hapmap];0.93[TSI][hapmap]
rs349555	1.00[JPT][hapmap]
rs349556	1.00[JPT][hapmap];0.93[TSI][hapmap]
rs349557	1.00[JPT][hapmap];0.93[TSI][hapmap]
rs349562	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349565	0.82[TSI][hapmap]
rs349566	0.82[TSI][hapmap]
rs349567	0.82[TSI][hapmap]
rs349568	0.82[TSI][hapmap]
rs349569	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61559704	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6773345	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6786832	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7634918	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9862730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv34489	chr3:140009020-140469302	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2757012	chr3:140009220-140460228	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv591863	chr3:140126067-140274442	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140216400-140227600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:140218000-140227800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:140220200-140228000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:140223400-140225600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:140223400-140225600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:140223400-140225600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:140223400-140226200	Enhancers	HSMMtube	muscle
8	chr3:140223800-140225600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:140224000-140225600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:140224200-140228200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:140224400-140225800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:140224400-140228000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:140224400-140228200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:140224400-140247200	Weak transcription	Ovary	ovary
15	chr3:140224800-140228000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:140225000-140228000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:140225000-140236800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:140225200-140226400	Weak transcription	Adipose Nuclei	Adipose
19	chr3:140225200-140227600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:140225200-140227600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:140225400-140227400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:140225400-140228200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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