Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11707041	0.82[EUR][1000 genomes]
rs16826858	0.81[GIH][hapmap]
rs16826899	0.81[GIH][hapmap]
rs16826906	0.81[GIH][hapmap]
rs16826948	0.81[GIH][hapmap]
rs1995425	0.91[CEU][hapmap]
rs2321455	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs2874490	0.82[ASW][hapmap];0.81[GIH][hapmap];0.90[LWK][hapmap];0.83[YRI][hapmap]
rs2874491	0.82[ASW][hapmap];0.81[GIH][hapmap];0.88[LWK][hapmap];0.83[YRI][hapmap]
rs344076	0.81[GIH][hapmap]
rs344088	0.81[GIH][hapmap]
rs344090	0.81[GIH][hapmap]
rs491423	0.81[GIH][hapmap]
rs6441103	0.83[GIH][hapmap]
rs6441104	0.83[YRI][hapmap]
rs6763644	0.81[GIH][hapmap]
rs6787952	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6803064	0.91[CEU][hapmap]
rs7609851	0.81[GIH][hapmap]
rs7615304	0.88[TSI][hapmap]
rs7650127	0.81[GIH][hapmap]
rs873337	0.80[MEX][hapmap]
rs9814813	0.91[CEU][hapmap];0.97[TSI][hapmap]
rs987724	0.91[CEU][hapmap];0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156579600-156581200	Enhancers	NHEK	skin
2	chr3:156580200-156581200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:156580400-156581200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:156581000-156581200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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