Variant report

Variant	rs7616964
Chromosome Location	chr3:118964552-118964553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6804705	1.00[AMR][1000 genomes]
rs72655912	1.00[AMR][1000 genomes]
rs72655917	1.00[AMR][1000 genomes]
rs72953055	1.00[AMR][1000 genomes]
rs72953069	1.00[AMR][1000 genomes]
rs7650757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651658	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9876197	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118960200-118964600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:118960200-118964600	Weak transcription	Right Atrium	heart
3	chr3:118960200-118964800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:118960400-118966200	Weak transcription	Primary T cells from cord blood	blood
5	chr3:118960600-118964600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:118960600-118964800	Weak transcription	Adipose Nuclei	Adipose
7	chr3:118960600-118964800	Weak transcription	Placenta	Placenta
8	chr3:118960800-118964600	Weak transcription	Stomach Mucosa	stomach
9	chr3:118961000-118964600	Weak transcription	Right Ventricle	heart
10	chr3:118961600-118967400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:118962800-118966000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:118964200-118964800	Enhancers	Psoas Muscle	Psoas
13	chr3:118964200-118965000	Enhancers	Fetal Muscle Trunk	muscle
14	chr3:118964200-118965800	Enhancers	Fetal Muscle Leg	muscle
15	chr3:118964400-118964600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:118964400-118965000	Enhancers	Duodenum Mucosa	Duodenum
17	chr3:118964400-118965200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:118964400-118965400	Enhancers	Esophagus	oesophagus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links