Variant report

Variant	rs7617021
Chromosome Location	chr3:67848865-67848866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56062840	0.83[AFR][1000 genomes]
rs7617222	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9812097	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820714	0.86[AFR][1000 genomes]
rs9836936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9841022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67847600-67849000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:67848000-67849000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:67848000-67852200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:67848800-67849000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:67848800-67849200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:67848800-67849600	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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