Variant report

Variant	rs761707
Chromosome Location	chr6:100677172-100677173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:100675649..100678406-chr6:100706884..100708922,2	K562	blood:
2	chr6:100671535..100676020-chr6:100676735..100678390,4	K562	blood:
3	chr6:100671535..100674999-chr6:100676735..100678390,3	K562	blood:
4	chr6:100675649..100678323-chr6:100706693..100708384,2	K562	blood:
5	chr6:100623345..100625127-chr6:100676726..100678390,2	MCF-7	breast:
6	chr6:100676458..100678188-chr6:100705698..100707425,2	MCF-7	breast:
7	chr6:100667522..100670093-chr6:100673930..100678606,4	K562	blood:

Variant related genes	Relation type
ENSG00000216378	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12195282	0.88[AMR][1000 genomes]
rs1555237	0.91[AMR][1000 genomes]
rs2066947	0.88[ASN][1000 genomes]
rs2073265	0.90[ASN][1000 genomes]
rs2224066	0.88[ASN][1000 genomes]
rs2224067	0.88[ASN][1000 genomes]
rs2397802	0.86[AMR][1000 genomes]
rs6920289	0.91[AMR][1000 genomes]
rs6940076	0.88[AMR][1000 genomes]
rs6940893	0.88[ASN][1000 genomes]
rs714606	0.91[AMR][1000 genomes]
rs730223	0.91[AMR][1000 genomes]
rs9321945	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604262	chr6:100661336-100701917	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1001991	chr6:100674651-100685935	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1795039	chr6:100674799-100691977	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100676000-100677600	Enhancers	Fetal Heart	heart
2	chr6:100676200-100677200	Active TSS	Primary T killer memory cells from peripheral blood	blood
3	chr6:100676200-100677200	Active TSS	Brain Anterior Caudate	brain
4	chr6:100676200-100677200	Active TSS	Fetal Lung	lung
5	chr6:100676200-100677200	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
6	chr6:100676200-100677200	Flanking Active TSS	NHEK	skin
7	chr6:100676400-100677200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:100676400-100677200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:100676400-100677200	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:100676400-100677200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:100676400-100677200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr6:100676400-100677200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:100676400-100677200	Active TSS	Adipose Nuclei	Adipose
14	chr6:100676400-100677200	Active TSS	Brain Angular Gyrus	brain
15	chr6:100676400-100677200	Active TSS	Colonic Mucosa	Colon
16	chr6:100676400-100677200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr6:100676400-100677200	Active TSS	Fetal Kidney	kidney
18	chr6:100676400-100677200	Active TSS	Fetal Muscle Leg	muscle
19	chr6:100676400-100677200	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr6:100676400-100677200	Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr6:100676400-100677200	Flanking Active TSS	HMEC	breast
22	chr6:100676400-100677200	Active TSS	Osteobl	bone
23	chr6:100676400-100677400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr6:100676400-100677400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:100676400-100677400	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
26	chr6:100676400-100677400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:100676400-100677400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:100676400-100677400	Flanking Active TSS	Liver	Liver
29	chr6:100676400-100677400	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr6:100676400-100677400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:100676400-100677400	Active TSS	Duodenum Mucosa	Duodenum
32	chr6:100676400-100677400	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr6:100676400-100677400	Active TSS	Fetal Brain Female	brain
34	chr6:100676400-100677400	Active TSS	Psoas Muscle	Psoas
35	chr6:100676400-100677400	Active TSS	Right Atrium	heart
36	chr6:100676400-100677400	Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr6:100676400-100677400	Enhancers	Stomach Mucosa	stomach
38	chr6:100676400-100677400	Active TSS	Stomach Smooth Muscle	stomach
39	chr6:100676400-100677400	Flanking Active TSS	NH-A	brain
40	chr6:100676400-100677600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:100676400-100677600	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr6:100676600-100677200	Active TSS	H1 Cell Line	embryonic stem cell
43	chr6:100676600-100677200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr6:100676600-100677200	Active TSS	H9 Cell Line	embryonic stem cell
45	chr6:100676600-100677200	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr6:100676600-100677200	Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr6:100676600-100677200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:100676600-100677200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:100676600-100677200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
50	chr6:100676600-100677200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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