Variant report

Variant	rs7618361
Chromosome Location	chr3:155525419-155525420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155522731..155527439-chr3:155568712..155573851,7	MCF-7	breast:
2	chr3:155524430..155525997-chr3:155545750..155547952,2	MCF-7	breast:
3	chr3:155524299..155526262-chr3:155527847..155530025,2	K562	blood:
4	chr3:155521670..155525457-chr3:155569550..155572694,3	MCF-7	breast:
5	chr3:155522036..155526613-chr3:155586597..155592084,8	K562	blood:

Variant related genes	Relation type
ENSG00000169359	Chromatin interaction
ENSG00000163655	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13314750	0.83[ASN][1000 genomes]
rs13324811	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4602344	0.82[EUR][1000 genomes]
rs56190569	0.93[ASN][1000 genomes]
rs62284705	0.93[ASN][1000 genomes]
rs7372113	0.96[ASN][1000 genomes]
rs7618998	0.90[EUR][1000 genomes]
rs7620836	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853408	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879847	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv999641	chr3:155481097-155534616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155524400-155525600	Weak transcription	Fetal Heart	heart
2	chr3:155524400-155527000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:155524400-155527000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:155524400-155527200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:155524400-155527400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:155524400-155542800	Weak transcription	Left Ventricle	heart
7	chr3:155524400-155543600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:155524400-155547000	Weak transcription	HSMMtube	muscle
9	chr3:155524400-155565800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:155524400-155567400	Weak transcription	Lung	lung
11	chr3:155524400-155569400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:155524600-155525600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:155524600-155525600	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:155524600-155527200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:155524600-155527400	Weak transcription	Osteobl	bone
16	chr3:155524600-155532800	Weak transcription	K562	blood
17	chr3:155524600-155544200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:155524600-155563400	Weak transcription	Brain Angular Gyrus	brain
19	chr3:155524600-155568000	Weak transcription	HUVEC	blood vessel
20	chr3:155524800-155525600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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