Variant report

Variant	rs7618691
Chromosome Location	chr3:159759401-159759402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11929543	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12637246	0.94[ASN][1000 genomes]
rs12639188	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs730609	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159757200-159766600	Weak transcription	Pancreas	Pancrea
2	chr3:159757400-159759600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:159757400-159760200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:159757600-159760000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:159758400-159762400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:159759400-159759600	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links