Variant report

Variant	rs7619006
Chromosome Location	chr3:21060397-21060398
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1497512	0.82[AMR][1000 genomes]
rs1497513	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1497515	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17008140	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1846073	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1908979	0.84[EUR][1000 genomes]
rs1908984	0.81[ASN][1000 genomes]
rs2886760	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4444730	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4858289	0.91[EUR][1000 genomes]
rs73130010	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73130015	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7620710	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7632125	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641963	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7652463	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs924224	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs970721	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876607	chr3:20972475-21087219	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv876608	chr3:21008710-21203048	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv998068	chr3:21050191-21212603	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7619006	EFHB	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21059000-21065800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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