Variant report

Variant	rs7619210
Chromosome Location	chr3:119005533-119005534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10511386	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs10934490	0.83[EUR][1000 genomes]
rs11710080	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12497738	0.83[EUR][1000 genomes]
rs13314464	0.83[EUR][1000 genomes]
rs1375135	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs1448434	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs1542233	0.80[YRI][hapmap]
rs2278781	0.85[EUR][1000 genomes]
rs3732412	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs4687994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62265236	0.86[EUR][1000 genomes]
rs62265237	0.83[EUR][1000 genomes]
rs6438518	0.83[EUR][1000 genomes]
rs6438519	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs6438520	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs6438521	0.86[EUR][1000 genomes]
rs6438522	0.83[EUR][1000 genomes]
rs6438523	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs6762580	0.86[EUR][1000 genomes]
rs6785727	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs6786522	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs6789881	0.82[EUR][1000 genomes]
rs6799733	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs7610546	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs7611832	0.86[EUR][1000 genomes]
rs7644570	0.83[EUR][1000 genomes]
rs7649480	0.89[EUR][1000 genomes]
rs7649930	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs9822211	0.83[EUR][1000 genomes]
rs9825078	0.85[EUR][1000 genomes]
rs9834750	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs9847963	0.83[EUR][1000 genomes]
rs9861372	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs9861688	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs9877740	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119002000-119007600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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