Variant report
| Variant | rs7620323 |
|---|---|
| Chromosome Location | chr3:159148629-159148630 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:159147245..159149720-chr3:159151129..159153409,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs16830232 | 1.00[YRI][hapmap] |
| rs16830267 | 1.00[YRI][hapmap] |
| rs16830290 | 1.00[YRI][hapmap] |
| rs16830298 | 1.00[YRI][hapmap] |
| rs16830299 | 1.00[YRI][hapmap] |
| rs16830314 | 1.00[YRI][hapmap] |
| rs16830326 | 1.00[YRI][hapmap] |
| rs16830331 | 1.00[YRI][hapmap] |
| rs16830334 | 1.00[YRI][hapmap] |
| rs1844468 | 1.00[YRI][hapmap] |
| rs2102724 | 1.00[YRI][hapmap] |
| rs3912726 | 1.00[YRI][hapmap] |
| rs6796565 | 1.00[YRI][hapmap] |
| rs7620403 | 1.00[YRI][hapmap] |
| rs7629397 | 1.00[YRI][hapmap] |
| rs7639707 | 1.00[YRI][hapmap] |
| rs7642306 | 1.00[YRI][hapmap] |
| rs9871361 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv470971 | chr3:158590928-159158217 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004990 | chr3:159090974-159174954 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:159147800-159149000 | Weak transcription | Fetal Brain Male | brain |
